Yearly Archives: 2014

2015 Bodega Bay Workshop in Applied Phylogenetics

Applications for the 2015 Bodega Bay Phylogenetics course are now being accepted (deadline is January 10th). The course provides an in-depth and hands on introduction to statistical phylogenetic and comparative methods. Topics include model selection and inference for phylogeny, divergence

Read more ›

Posted in phylogenetics, teaching

On building a small cluster

Upon request from a reader, I just put up a quick post over at treethinkers.org that discusses our lab’s cluster, some general thoughts and pros and cons of doing a self build, versus buying, versus just sticking with shared resources.

Read more ›

Posted in informatics, lab, phylogenetics

Fall Lab Meeting Schedule

28 August – Organization 4 September – No meeting (field work) 11 September – Evan 18 September – Open 25 September – Amber 2 October – Robyn 9 October – Emilie 16 October – Eli 23 October – Bob 30

Read more ›

Posted in lab, UH

More on microRNAs

Casey Dunn has new commentary up at PNAS on our recently published microRNA paper. Check it out here. Dunn, CW (2014) Reconsidering the phylogenetic utility of miRNA in animals. PNAS.doi:10.1073/pnas.1413545111.

Posted in genomics, informatics, phylogenetics

Hawaii’s Herps

Departing briefly from their normal topics, Hawaii Business magazine published an article this month on herps in Hawaii. It’s a short trivia style article that basically points out the paucity of native reptiles and amphibians in our state and has

Read more ›

Posted in herps, Natural History

Pond Turtles

(Bio)accumulation blog is doing a nice job of aggregating literature on the Western Pond turtle. A couple of new additions to the list are up, including our recent SNP paper that proposes splitting the Western Pond Turtle into two species.

Posted in conservation, genomics, herps, Natural History

Hurricanes

Running a research lab in the tropics presents some unique challenges. Over these first few years in Honolulu, this has been a process of discovery that ranges from amusing (geckos invading the office) to annoying (condensation accumulating in computers). We

Read more ›

Posted in lab, UH

microRNAs in Phylogenetics

Our paper on the use of microRNAs for phylogenetic inference is out today in the early edition at PNAS. A news story on the paper is also up at Nature, along with a news highlight at PNAS. Fun fact: The turtle

Read more ›

Posted in genomics, phylogenetics

Kauai Softshells

We’ve just returned from our fieldwork in Kauai!  Bob and I did a very thorough job surveying the island for suitable habitat and existing populations of P. sinensis and P. steindachneri.  In fact, we put 741 miles on the rental

Read more ›

Posted in herps, travel

Gone herping

Me, Caroline, and Amber Wright got to Kauai today for a week of field work. Caroline and I are trapping soft shells for one of her masters projects, and Amber is collecting data on lizard abundance and competition. We had

Read more ›

Posted in herps, travel